Jun 272013
 

AutoMatrix

:: DESCRIPTION

AutoMatrix is a Matlab script that will calculate an instantaneous rate matrix (and its eigen value decompostion for use in phylip programs) from a series of substitution count matrices calculated for different levels of sequence identity/similarity.

::DEVELOPER

The Tillier Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • MatLab

:: DOWNLOAD

 AutoMatrix

:: MORE INFORMATION

Citation:

A transition probability model for amino acid substitutions from BLOCKS
Shalini Veerassamy, Andrew Smith and Elisabeth R. M. Tillier,
J. Computational Biology (2003) 10(6): 997-1010

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