AUTOGSCAN automates the processes of file formatting, running the statistical analyses, and summarizing the resulting statistics for whole genome scans with one push of a button, using several independent, and often idiosyncratic, statistical software packages, such as MERLIN, SOLAR, and GENEHUNTER. We also describe a program, ANALYZE, designed for running qualitative linkage analysis with several different statistical strategies and programs to efficiently screen for linkage and linkage disequilibrium for a given discrete trait. The ANALYZE program can also be used in a genome-wide sense by AUTOGSCAN.
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Tero Hiekkalinna, Joseph D Terwilliger, Sampo Sammalisto, Leena Peltonen and Markus Perola.
AUTOGSCAN: Powerful Tools for Automated Genome-wide Linkage and Linkage Disequilibrium Analysis.
Twin Research and Human Genetics, 2005 Feb, Vol 8, No 1 pp. 16-21.