AutoCSA (Automatic Comparative Sequence Analysis) is a mutation detection program designed to detect small mutations (1-50 bases) in sequence traces. The software is capable of detecting both homozygous and heterozygous base substitutions, as well as small insertions and deletions, to a high sensitivity.
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Bioinformatics. 2007 Jul 1;23(13):1689-91. Epub 2007 May 7.
AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes.
Dicks E, Et al.