:: DESCRIPTION
GrowthRates is a program that calculates bacterial growth rates from the data generated by a micro-plate reader used to monitor the growth of bacterial cultures in micro-plate wells. The program automatically identifies the exponential phase of the growth curve and uses that portion of the curve to calculate growth rates and std. errors of those rates
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
EvolveAGene is a DNA coding sequence evolution simulation program.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Mol Biol Evol. 2008 Apr;25(4):688-95. doi: 10.1093/molbev/msn008. Epub 2008 Jan 12.
Simulating DNA coding sequence evolution with EvolveAGene 3.
Hall BG.
:: DESCRIPTION
MSTgold calculates minimum spanning trees (MST) from protein and nucleotide sequences, from binary characters and SNPs, and from tab-delimited data such as microsatellite data. It also estimates the number of different MSTs from a data set, bootstraps MSTs, and identifies the most reliable tree among a set of equal-length MSTs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Stephen J. Salipante and Barry G. Hall
Inadequacies of Minimum Spanning Trees in Molecular Epidemiology
J. Clin. Microbiol. October 2011 vol. 49 no. 10 3568-3575
:: DESCRIPTION
FCS Express can rapidly analyze vast amounts of data, with industry leading flow cytometry tools, but we recognize that is only the beginning of the scientific journey. After the basic analysis is complete, you must compile spreadsheets comparing your data to previous experiments, create bar charts and scatter plots to show these differences and create presentations to show your work to others. FCS Express seamlessly takes you from your primary listmode data files to flexible overviews of your entire experiment.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
The QUAliFiER package takes advantage of the manual gates to perform an extensive series of statistical quality assessment checks on the gated cell sub-populations while taking into account the structure of the data and the study design to monitor the consistency of population statistics across staining panels, subject, aliquots, channels, or other experimental variables.
::DEVELOPER
Raphael Gottardo’s Research Lab
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
BMC Bioinformatics. 2012 Sep 28;13:252. doi: 10.1186/1471-2105-13-252.
QUAliFiER: an automated pipeline for quality assessment of gated flow cytometry data.
Finak G, Jiang W, Pardo J, Asare A, Gottardo R.
:: DESCRIPTION
openCyto is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.
::DEVELOPER
Raphael Gottardo’s Research Lab
:: SCREENSHOTS
N/A
::REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
BioLegend Flow Cytometry Application provides you with important information about your Flow Cytometers and Fluorochromes. Now you can use BioLegend’s Spectra Analyzer quickly and conveniently in the palm of your hand. We included an Antibody Usage Calculator and Timer to help with your experiments (Timer does not work in the background and will pause upon exiting the application).
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
BioLegend Flow Cytometry Application
:: MORE INFORMATION
:: DESCRIPTION
Cyflogic is a flow cytometry data analysis tool for Microsoft Windows enviroment. It has all “regular” analysis capabilities, such as dot plot, histogram and statistics. In addition, Cyflogic offers new innovative tools for your data analysis.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
The CellOrganizer project provides tools for :learning generative models of cell organization directly from images/ storing and retrieving those models in XML files/ synthesizing cell images (or other representations) from one or more models
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Methods Cell Biol. 2012;110:179-93.
CellOrganizer: Image-derived models of subcellular organization and protein distribution.
Murphy RF.
:: DESCRIPTION
ModFit LT follows the proud tradition of its predecessors – innovative features and unmatched flexibility to analyze even the most difficult DNA patterns. This is by far the most versatile DNA analysis software we have ever offered, featuring AutoDebris?, AutoAggregates?, AutoLinearity?, and exceptional batch processing. Powerful database support and an intuitive interface make this software a necessity in your laboratory. For fast, accurate analysis of DNA data files with report-ready screen layout, flexible databasing and user selectable analysis, look to ModFit LT™. This is the most comprehensive flow cytometric DNA Cell Cycle and Cell Proliferation analysis software available.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
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