AUTEUR uses reversible-jump Markov chain Monte Carlo sampling to more fully characterize the complexity of trait evolution, considering models that range in complexity from those with a single global rate to potentially ones in which each branch in the tree has its own independent rate.
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Evolution. 2011 Dec;65(12):3578-89. doi: 10.1111/j.1558-5646.2011.01401.x. Epub 2011 Aug 24.
A novel comparative method for identifying shifts in the rate of character evolution on trees.
Eastman JM1, Alfaro ME, Joyce P, Hipp AL, Harmon LJ.