Athena is a software that allows biological models to be constructed as modules. Modules can be connected to one another without altering the modules themselves. In addition, Athena houses various tools useful for designing synthetic networks including tools to perform simulations, automatically derive transcription rate expressions, and view and edit synthetic DNA sequences. New tools can be incorporated into Athena without modifying existing program via a plugin interface, IronPython scripts, Systems Biology Workbench interfacing and the R statistical language.
Frank T. Bergmann (email@example.com)
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Athena: Modular CAM/CAD Software for Synthetic Biology
Deepak Chandran, Frank T. Bergmann, Herbert M. Sauro