The ASIM is a set of computer programs which support the Bayesian model building of in silico biological pathways. It is organized as follows: (1) Pathway modeling with kinetic rate equations (differential equations) using the hybrid functional Petri net, (2) Parameter estimation of rate equations (3) Test on the ability of the constructed models in terms of predictability and biological robustness.
- Linux / WIndows/ MacOsX
- Fortran 77
:: MORE INFORMATION
Bioinformatics. 2008 Nov 15;24(22):2592-601. doi: 10.1093/bioinformatics/btn483.
Bayesian learning of biological pathways on genomic data assimilation.
Yoshida R, Nagasaki M, Yamaguchi R, Imoto S, Miyano S, Higuchi T.