Apr 282014
 

ASH 1.2 / RASH / GASH

:: DESCRIPTION

ASH is a structure alignment program that has been developed for PDBj.

RASH Rapid ASH computes pair-wise alignments in under 1 second. RASH is generally sufficient if the structures are very similar.

GASH Genetic-algorithm ASH generates very accurate alignments in about twice the time as RASH. GASH is the best choice if the structures are only partially similar or if multiple solutions are required.

::DEVELOPER

Daron M Standley,  Prof. Hiroyuki Toh

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

  ASH

:: MORE INFORMATION

Citation

ASH structure alignment package: sensitivity and selectivity in domain classification.
Standley DM, Toh H, Nakamura H.
BMC Bioinformatics. 2007 Apr 4;8:116.

GASH: an improved algorithm for maximizing the number of equivalent residues between two protein structures.
Standley DM, Toh H, Nakamura H.
BMC Bioinformatics. 2005 Sep 8;6:221

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