Arlequin is an exploratory population genetics software environment able to handle large samples of molecular data (RFLPs, DNA sequences, microsatellites), while retaining the capacity of analyzing conventional genetic data (standard multi-locus data or mere allele frequency data).
The goal of Arlequin is to provide the average user in population genetics with quite a large set of basic methods and statistical tests, in order to extract information on genetic and demographic features of a collection of population samples.
Laurent Excoffier ,Computational and Molecular Population Genetics Lab, University of Bern
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Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.
Excoffier L, Lischer HE.
Mol Ecol Resour. 2010 May;10(3):564-7. doi: 10.1111/j.1755-0998.2010.02847.x.