Dec 092014
 

AptaCluster / AptaGUI

:: DESCRIPTION

AptaCluster allows for an efficient clustering of whole HT-SELEX aptamer pools; a task that could not be accomplished with traditional clustering algorithms due to the enormous size of such datasets

AptaGUI is a graphical user interface for AptaCluster, written in Java. This program allows for visual inspection of HT-SELEX experiments in a concise and efficient manner.

::DEVELOPER

Teresa Przytycka Research Group

:: SCREENSHOTS

AptaGUI

:: REQUIREMENTS

  • Windows/Linux / MacOsX
  • Java

:: DOWNLOAD

 AptaCluster / AptaGUI

:: MORE INFORMATION

Citation:

AptaCluster – A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application.
Hoinka J, Berezhnoy A, Sauna ZE, Gilboa E, Przytycka TM.
Research in Computational Molecular Biology Lecture Notes in Computer Science Volume 8394, 2014, pp 115-128

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