APE (Allelic Path Explorer) is a program for extending partially known genotype data on a given pedigree consistently (i.e. in accordance with the Mendelian rules) to the whole pedigree.
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Pirinen M and Gasbarra D (2006):
Finding Consistent Gene Transmission Patterns on Large and Complex Pedigrees.
IEEE/ACM Trans. on Computational Biology and Bioinformatics vol.3 no.3:252-262