Jul 152014
 

Allim 1.1

:: DESCRIPTION

Allim (Allelic imbalance meter) offers an integrated and user-friendly solution for measuring allele specific gene expression (ASE) within species.

DEVELOPER

Institute of Population Genetics, University of Veterinary Medicine Vienna

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Python
  • BioPython
  • Java
  • PICARD
  • R
  • SAMTOOLS
  • BedTools

:: DOWNLOAD

 Allim

:: MORE INFORMATION

Citation:

Pandey RV, Franssen SU, Futschik A, Schlötterer C. (2013)
Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data.
Mol Ecol Resour. 13(4):740-745.

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