Apr 302015
 

AllelePipe 1.0.28

:: DESCRIPTION

AllelePipe is a pipeline to cluster putative alleles within and among individuals. AllelePipe is designed specifically for cases in which read depth information is not appropriate or available to assist with disentangling closely related paralogs from allelic variation, as in transcriptome or previously assembled libraries.

::DEVELOPER

The Dlugosch Lab @ The University of Arizona

:: SCREENSHOTS

N/A

: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 AllelePipe

:: MORE INFORMATION

Citation

G3 (Bethesda). 2013 Feb;3(2):359-67. doi: 10.1534/g3.112.003871.
Allele identification for transcriptome-based population genomics in the invasive plant Centaurea solstitialis.
Dlugosch KM, Lai Z, Bonin A, Hierro J, Rieseberg LH.

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