Apr 162014
 

AlignMe 1.1

:: DESCRIPTION

AlignMe is a C++ program to align distantly related membrane proteins by including several input parameters. Alignments based on substitution matrices, Position Specific Matrices (PSSMs), hydrophobicity scales and any kind of profiles (membrane predictions, secondary structure predictions etc.).

::DEVELOPER

Forrest Lab

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

 AlignMe

:: MORE INFORMATION

Citation

PLoS One. 2013;8(3):e57731. doi: 10.1371/journal.pone.0057731. Epub 2013 Mar 4.
Alignment of helical membrane protein sequences using AlignMe.
Stamm M1, Staritzbichler R, Khafizov K, Forrest LR.

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