alfy is a computer program for comparing one or more query DNA sequences to a set of subject sequences. For each query sequence the output consists of a list of intervals indicating the closest homologue among the set of subject sequences.
- C Compiler
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Alignment-free detection of local similarity among viral and bacterial genomes.
Domazet-Lošo M, Haubold B.
Bioinformatics. 2011 Jun 1;27(11):1466-72.