Mar 302016
 

ALEA 1.2.2

:: DESCRIPTION

ALEA incorporates allelic variation data within existing resources, allowing for the identification of significant associations between epigenetic modifications and specific allelic variants in human and mouse cells. ALEA provides a customizable pipeline of command line tools for AS analysis of next-generation sequencing data (ChIP-seq, RNA-seq, etc.) that takes the raw sequencing data and produces separate allelic tracks ready to be viewed on genome browsers.

::DEVELOPER

Mohammad Karimi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Java

:: DOWNLOAD

 ALEA

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Jan 21.
ALEA: a toolbox for allele-specific epigenomics analysis.
Younesy H1, Möller T, Heravi-Moussavi A, Cheng JB, Costello JF, Lorincz MC, Karimi MM, Jones SJ.

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