AhoPro – Seach for Overrepresentation of Given motifs in DNA sequences, P-value calculation

AhoPro

:: DESCRIPTION

The project AhoPro was created to seach for overrepresentation of given motifs in DNA sequences and to search for motif cooccurrence. This could discover the synergy of transcription factors (TF), which usually takes place in regulatory modules of genes.

Advertisement

::DEVELOPER

Laboratory of bioinformatics , State Research Institute of Genetics And Selection of Industrial Microorganism

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • WIndows

:: DOWNLOAD

 AhoPro

:: MORE INFORMATION

Citation:

Algorithms Mol Biol. 2007 Oct 10;2:13.
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules.
Boeva V, Clément J, Régnier M, Roytberg MA, Makeev VJ.

Leave a Reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.