ADDA version 4
ADDA is an automatic algorithm for domain decomposition and clustering of all protein domain families. the authors use alignments derived from an all-on-all sequence comparison to define domains within protein sequences based on a global maximum likelihood model.
The Institute of Biotechnology (BI) at the University of Helsinki
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Heger A, Holm L (2003)
Exhaustive enumeration of protein families.
J Mol Biol 328(3):749-67.