ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular contig connectivity and supporting paired-end read relationships.
- Windows / Mac / Linux
:: MORE INFORMATION
Nielsen CB, Jackman SD, Birol I, Jones SJM.
ABySS-Explorer: Visualizing genome sequence assemblies.
IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009). 2009. 15(6):881-8.