:: DESCRIPTION
phyloBreak was designed to simulate gene genealogies and to analyze phylogeographic breaks in these gene genealogies
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Kuo CH, Avise JC. 2005.
Phylogeographic breaks in low-dispersal species: the emergence of concordance across gene trees.
Genetica, 124, 179-186. DOI: 10.1007/s10709-005-2095-y
genePed 2.0 :: DESCRIPTION genePed is designed to generate gene genealogies that are either independent of each other or all share one common organismal pedigree. ::DEVELOPER Chih-Horng Kuo :: SCREENSHOTS N/A :: REQUIREMENTS Windows / Linux/ MacOsX C++ Compiler :: DOWNLOAD genePed :: MORE INFORMATION Citation Kuo CH, Avise JC. 2008. Does organismal pedigree impact [More...]
BottleSim 2.6 :: DESCRIPTION BottleSim is a computer simulation program for simulating the process of population bottlenecks ::DEVELOPER Chih-Horng Kuo :: SCREENSHOTS N/A :: REQUIREMENTS Windows / Linux/ MacOsX :: DOWNLOAD BottleSim :: MORE INFORMATION Citation Kuo C-H, Janzen FJ (2003) Population bottleneck simulator. Molecular Ecology Notes, 3, 669-673. Share ThisTweetFacebookLinkedInTumblrStumbleDiggDelicious
BEERS :: DESCRIPTION BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithms that aim to reconstruct different isoforms and alternate splicing from RNA-Seq data ::DEVELOPER the Computational Biology and Informatics Laboratory (in the Center for Bioinformatics at the University of Pennsylvania) :: SCREENSHOTS N/A :: REQUIREMENTS Linux/ MacOsX Perl :: DOWNLOAD BEERS :: MORE [More...]
DNAmelt :: DESCRIPTION DNAmelt is a Matlab toolbox to compute DNA melting properties using a helicoidal transfer matrix model. ::DEVELOPER Tom Michoel :: SCREENSHOTS N/A :: REQUIREMENTS Linux/windows/MacOsX Matlab :: DOWNLOAD DNAmelt :: MORE INFORMATION Citation: Phys. Rev. E 73, 011908 (2006) [11 pages] Helicoidal transfer matrix model for inhomogeneous DNA melting Tom Michoel and [More...]
SCHype 1.0 :: DESCRIPTION SCHype is a Java command line tool for spectral clustering in hypergraphs ::DEVELOPER Tom Michoel :: SCREENSHOTS N/A :: REQUIREMENTS Linux/windows/MacOsX java :: DOWNLOAD SCHype :: MORE INFORMATION Citation: Alignment and integration of complex networks by hypergraph-based spectral clustering Tom Michoel, Bruno Nachtergaele Share ThisTweetFacebookLinkedInTumblrStumbleDiggDelicious
Twixtrix r4 :: DESCRIPTION Twixtrix is a Matlab and R tool for inferring context-specific transcriptional regulatory networks from gene expression data ::DEVELOPER Tom Michoel :: SCREENSHOTS N/A :: REQUIREMENTS Linux/windows/MacOsX Matlab R package :: DOWNLOAD Twixtrix :: MORE INFORMATION Citation: Jianlong Qi and Tom Michoel “Context-specific transcriptional regulatory network inference from global gene expression maps [More...]
lemon-tree 3.0.1 :: DESCRIPTION LemonTree (former LeMoNe) is an algorithm to infer a module network from biological data. It can integrate heterogeneous data types such as expression data, copy number, microRNA, epigenetic profiles. ::DEVELOPER Tom Michoel :: SCREENSHOTS N/A :: REQUIREMENTS Linux/windows/MacOsX Java :: DOWNLOAD lemon-tree :: MORE INFORMATION Citation: Transcription regulatory networks in Caenorhabditis [More...]
Network Motif Clustering Toolbox 2.0 :: DESCRIPTION The Network Notif Clustering Toolbox is a Matlab/Octave toolbox for clustering topological network motifs in large-scale, integrated networks. The clustering algorithm is based on rigorous mathematical results and has been validated on an integrated yeast interaction network. ::DEVELOPER Tom Michoel :: SCREENSHOTS N/A :: REQUIREMENTS Linux / Windows [More...]
Sequence Scanner 1.0 :: DESCRIPTION Sequence Scanner Software enables you to view, edit, print and export sequence data generated using the Applied Biosystems Genetic Analyzers. The software generates graphically expressive reports on results. ::DEVELOPER Life Technologies :: SCREENSHOTS :: REQUIREMENTS Windows :: DOWNLOAD Sequence Scanner :: MORE INFORMATION Share ThisTweetFacebookLinkedInTumblrStumbleDiggDelicious
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