Dec 192014
 

Sephiroth 20140618

:: DESCRIPTION

Sephiroth is a disulfide connectivity pattern predictor based on evolutionary information retrieved from Multiple Sequence Alignments (MSAs).

::DEVELOPER

Dec 192014
 
DynaMine Beta - Predicting Protein Dynamics from Sequence

DynaMine Beta :: DESCRIPTION DynaMine is a fast predictor of protein backbone dynamics using only sequence information as input. ::DEVELOPER DynaMine team :: SCREENSHOTS N/A ::REQUIREMENTS Linux Python :: DOWNLOAD  DynaMine :: MORE INFORMATION Citation The DynaMine webserver: predicting protein dynamics from sequence. Cilia E, Pancsa R, Tompa P, Lenaerts T, Vranken WF. Nucleic Acids [...]

Dec 192014
 
TMKink - Transmembrane Kink Predictor

TMKink :: DESCRIPTION TMKink is a method to predict transmembrane helix kinks. ::DEVELOPER BOWIE LAB :: SCREENSHOTS N/A ::REQUIREMENTS Web Browser :: DOWNLOAD  NO :: MORE INFORMATION Citation Protein Sci. 2011 Jul;20(7):1256-64. doi: 10.1002/pro.653. Epub 2011 Jun 2. TMKink: a method to predict transmembrane helix kinks. Meruelo AD1, Samish I, Bowie JU.

Dec 192014
 
PRISM 1.1.6 / PRISM_CTX 1.0.1 - Pair Read Informed Split Mapper

PRISM 1.1.6 / PRISM_CTX 1.0.1 :: DESCRIPTION PRISM is a software for split read (reads which span across a structrual variant — SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX [...]

Dec 192014
 
MedSavant 1.3.6 - Search Engine for Genetic Variants

MedSavant 1.3.6 :: DESCRIPTION MedSavant is a tool that helps find the genetic causes of disease. ::DEVELOPER the Computational Biology Lab at the University of Toronto’s Department of Computer Science. :: SCREENSHOTS N/A ::REQUIREMENTS Linux / Windows/ MacOsX Java :: DOWNLOAD  MedSavant :: MORE INFORMATION

Dec 192014
 
PhenoTips 1.0.2 - Patient Phenotyping software

PhenoTips 1.0.2 :: DESCRIPTION PhenoTips is an open source software tool for collecting and analyzing phenotypic information for patients with genetic disorders. ::DEVELOPER Computational Biology Lab at the University of Toronto :: SCREENSHOTS N/A :: REQUIREMENTS Linux/MacOsx/WIndows Web Server Java HSQLDB Jetty :: DOWNLOAD  PhenoTips :: MORE INFORMATION Citation: Hum Mutat. 2013 Aug;34(8):1057-65. doi: 10.1002/humu.22347. Epub [...]

Dec 192014
 
Segway 1.2 - a way to Segment the Genome

Segway 1.2 :: DESCRIPTION Segway contains a novel method for analyzing multiple tracks of functional genomics data. Our method uses a dynamic Bayesian network (DBN) model, which enables it to analyze the entire genome at 1-bp resolution even in the face of heterogeneous patterns of missing data. This method is the first application of DBN [...]

Dec 192014
 
Genomedata 1.3.5 - Storage of Multiple Tracks of Numeric data Anchored to Genome

Genomedata 1.3.5 :: DESCRIPTION Genomedata is a format for efficient storage of multiple tracks of numeric data anchored to a genome. The format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint. ::DEVELOPER Noble Research Lab :: SCREENSHOTS N/A :: REQUIREMENTS Linux / Windows / MacOsX Python [...]

Dec 192014
 
SNPlice 1.7.2 - Find SNPs influencing splicing in NGS mRNA data

SNPlice 1.7.2 :: DESCRIPTION SNPlice is a software tool to find and evaluate the co-occurrence of single-nucleotide-polymorphisms (SNP) and altered splicing in next-gen mRNA sequence reads. ::DEVELOPER Edwards Lab :: SCREENSHOTS N/A :: REQUIREMENTS Linux Python :: DOWNLOAD  SNPlice :: MORE INFORMATION Citation SNPlice: Variants that Modulate Intron-retention from RNA-sequencing Data. Mudvari P, Movassagh M, [...]

Dec 192014
 
flowCL 1.4.0 - Semantic labelling of Flow Cytometric Cell Populations

flowCL 1.4.0 :: DESCRIPTION flowCL is a software package that performs semantic labelling of cell populations based on their surface markers and applied it to labelling of the Federation of Clinical Immunology Societies Human Immunology Project Consortium lyoplate populations as a use case. ::DEVELOPER Justin Meskas <jmeskas at bccrc.ca>, Radina Droumeva :: SCREENSHOTS N/A :: [...]