Feb 012015



EPMLR is a web-server which enables users to predict Linear B-cell epitope with their interested protein or peptide.


EPMLR team




  • Web Browser





BMC Bioinformatics. 2014 Dec 19;15(1):414.
EPMLR: Sequence-based linear B-cell epitope prediction method using multiple linear regression.
Lian Y, Ge M, Pan X.

Feb 012015
REAL 0.0.31 - REad ALigner for Next-generation Sequencing Reads

REAL 0.0.31 :: DESCRIPTION REAL is an efficient, accurate, and sensitive tool for aligning short reads obtained from next-generation sequencing. The programme can handle an enormous amount of single-end reads generated by the next-generation Illumina/Solexa Genome Analyzer. :: DEVELOPER Solon P. Pissis Dr. German Tischler :: SCREENSHOTS N/a :: REQUIREMENTS MacOsX/ Linux :: DOWNLOAD  REAL :: […]

Feb 012015
WEBnm@ 2.0 - Web-server for Normal Mode Analysis of proteins

WEBnm@ 2.0 :: DESCRIPTION WEBnm@ is meant to provide users with simple and automated computation and analysis of low-frequency normal modes for proteins. ::DEVELOPER Nathalie Reuter , Uni Computing :: SCREENSHOTS N/A :: REQUIREMENTS Web Browser :: DOWNLOAD  NO :: MORE INFORMATION Citation BMC Bioinformatics. 2014 Dec 30;15(1):6597. [Epub ahead of print] WEBnm@ v2.0: Web server and services […]

Feb 012015
LocARNA 1.8.0 - Global and Local Alignment of RNA

LocARNA 1.8.0 :: DESCRIPTION LocARNA is a package of tools for producing fast and high-quality pairwise and multiple alignment of RNA sequences. It uses a complex RNA energy model for simultaneous folding and sequence/structure alignment of the RNAs. LocARNA performs global, sequence local, or even structurally local alignment of the molecules. ::DEVELOPER Bioinformatics Group Albert-Ludwigs-University Freiburg […]

Feb 012015
DoMosaics 0.95 - Domain-centric Analysis of Proteins

DoMosaics 0.95 :: DESCRIPTION DoMosaics (previously known as AnGSTD) is an application that unifies protein domain annotation, domain arrangement analysis and visualization in a single tool. ::DEVELOPER DoMosaics team :: SCREENSHOTS :: REQUIREMENTS Linux / Windows/ MacOsX Java :: DOWNLOAD   DoMosaics :: MORE INFORMATION Citation: Bioinformatics. 2014 Jan 15;30(2):282-3. doi: 10.1093/bioinformatics/btt640. Epub 2013 Nov 12. […]

Feb 012015
MDAT - Multiple Domain Alignment Tool

MDAT :: DESCRIPTION MDAT is a progam to align multiple domain arrangements of different proteins.  The result is an alignment of domains that can be visualised. Additional a multiple sequence alignment can be calculated based on the multiple domain alignment. ::DEVELOPER Bornberglab – Bioinformatics at the IEB :: SCREENSHOTS N/A :: REQUIREMENTS Web Browser  NO […]

Feb 012015
SAMStat 1.5 - Display Sequence Statistics for Next Generation Sequencing

SAMStat 1.5 :: DESCRIPTION SAMStat is an efficient C program to quickly display statistics of large sequence files from next generation sequencing projects. ::DEVELOPER FANTOM :: SCREENSHOTS N/A ::  REQUIREMENTS Linux :: DOWNLOAD  SAMStat :: MORE INFORMATION Citation Bioinformatics. 2011 Jan 1;27(1):130-1. doi: 10.1093/bioinformatics/btq614. Epub 2010 Nov 18. SAMStat: monitoring biases in next generation sequencing data. […]

Feb 012015
TagDust 2.3- Extracts Mappable Reads from NGS gata.

TagDust 2.3 :: DESCRIPTION TagDust is a program to eliminate artifactual reads from next-generation sequencing data sets. ::DEVELOPER FANTOM :: SCREENSHOTS N/A ::  REQUIREMENTS Linux :: DOWNLOAD  TagDust :: MORE INFORMATION Citation BMC Bioinformatics. 2015 Jan 28;16(1):24. TagDust2: a generic method to extract reads from sequencing data. Lassmann T Lassmann T., et al. (2009) TagDust – A program […]

Feb 012015
FieldApp 1.0 - iPhone Application for Recording Observations in the Field

FieldApp 1.0 :: DESCRIPTION FieldApp is an application for recording observations during field trials for plant cultivar development or evaluation. Using FieldApp you can record observations in entry order, or jump to a specific entry. ::DEVELOPER Crop Informatics :: SCREENSHOTS :: REQUIREMENTS iPhone :: DOWNLOAD  FieldApp :: MORE INFORMATION

Feb 012015
Crop Informatics Workbench 0.3 - Desktop application for Management of Informatics data

Crop Informatics Workbench 0.3 :: DESCRIPTION The Crop Informatics Workbench provides a desktop environment for data management. ::DEVELOPER Crop Informatics :: SCREENSHOTS :: REQUIREMENTS MacOsX / Windows Java :: DOWNLOAD  Crop Informatics Workbench :: MORE INFORMATION