RVD – Hierarchical Bayesian model to detect Rare Single Nucleotide Variants

 DNA / Genome Analysis 0 views Comments Off on RVD – Hierarchical Bayesian model to detect Rare Single Nucleotide Variants
May 032015
 

RVD 27

:: DESCRIPTION

RVD2 is an ultra-sensitive variant detection model for low-depth targeted next-generation sequencing data

::DEVELOPER

Flaherty Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • Python

:: DOWNLOAD

 RVD2

:: MORE INFORMATION

Citation

RVD2: An ultra-sensitive variant detection model for low-depth heterogeneous next-generation sequencing data.
He Y, Zhang F, Flaherty P.
Bioinformatics. 2015 Apr 29. pii: btv275.

WSxM 5.0 D8 – Software for Scanning Probe Microscopy and Nanotechnology

 Image Analysis 0 views Comments Off on WSxM 5.0 D8 – Software for Scanning Probe Microscopy and Nanotechnology
May 032015
 
WSxM 5.0 D8 - Software for Scanning Probe Microscopy and Nanotechnology

WSxM 5.0 D8 :: DESCRIPTION WSxM is the renowned, powerful and user-friendly Windows application for Data Acquisition and Processing in Scanning Probe Microscopy (SPM) and a wide range of microscopy or spectroscopy techniques. ::DEVELOPER WSxM team :: SCREENSHOTS :: REQUIREMENTS Windows :: DOWNLOAD  WSxM :: MORE INFORMATION Citation: WSXM: a software for scanning probe microscopy […]

PopIns v1 – Population-scale Detection of Novel Sequence Insertions

 Genetics & Pedigree 0 views Comments Off on PopIns v1 – Population-scale Detection of Novel Sequence Insertions
May 032015
 
PopIns v1 - Population-scale Detection of Novel Sequence Insertions

PopIns v1 :: DESCRIPTION PopIns can discover and characterize non-reference insertions of 100 bp or longer on a population scale. ::DEVELOPER PopIns team :: SCREENSHOTS N/A :: REQUIREMENTS Linux SeqAn bwa velvet samtools sickle :: DOWNLOAD  PopIns :: MORE INFORMATION Citation: PopIns: population-scale detection of novel sequence insertions. Kehr B, Melsted P, Halldórsson BV. Bioinformatics. […]

May 032015
 
EDGE 2.0.0 - Extraction of Differential Gene Expression

EDGE 2.0.0 :: DESCRIPTION EDGE is a software package for the significance analysis of DNA microarray experiments for both standard and time course experiments based on our new Optimal Discovery Procedure and Time Course Methodology ::DEVELOPER Jeffrey Leek, Alan Dabney, Eva Monsen and John Storey. :: SCREENSHOTS :: REQUIREMENTS Windows / MacOsX / Linux R BioConductor :: DOWNLOAD […]

polyester 1.4.0 – Simulate RNA-seq Reads

 RNA Analysis 1 views Comments Off on polyester 1.4.0 – Simulate RNA-seq Reads
May 032015
 
polyester 1.4.0 - Simulate RNA-seq Reads

polyester 1.4.0 :: DESCRIPTION Polyester is an R package designed to simulate RNA-seq data, beginning with an experimental design and ending with collections of RNA-seq reads ::DEVELOPER Alyssa Frazee <alyssa.frazee at gmail.com>, Jeff Leek <jtleek at gmail.com> :: SCREENSHOTS N/A :: REQUIREMENTS Linux / Mac OsX / Windows R BioConductor :: DOWNLOAD  Polyester :: MORE INFORMATION […]

May 032015
 
Frida 1.1.0 - FRamework for Image Dataset Analysis

Frida 1.1.0 :: DESCRIPTION Frida (FRamework for Image Dataset Analysis) is image analysis software. Frida was developed by the Johns Hopkins University Tissue Microarray Core Facility. Frida is open source and written in 100% Java. Frida makes use of functionality from the NIH’s ImageJ application. ::DEVELOPER JHU Tissue MicroArray Core Facility :: SCREENSHOTS :: REQUIREMENTS […]

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GSA Image Analyser Batch Edition 1.1.2  - Analyse Images in Batch Mode

GSA Image Analyser Batch Edition 1.1.2 :: DESCRIPTION GSA Image Analyser Batch Edition is a program for the scientific evaluation of images. The Program can analyse all images in batch mode and store the results in a CSV files who can later be imported into any spreadsheet applications like Excel or Open Office. ::DEVELOPER GSA :: […]

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TiltPicker 2.0b13 - Particle Picker for Image Tilt Pairs

TiltPicker 2.0b13 :: DESCRIPTION TiltPicker is a graphical user interface for picking particles from image tilt pairs for such applications as random conical tilt (RCT) and orthogonal tilt reconstruction (OTR). ::DEVELOPER Professor Neil R. Voss. :: SCREENSHOTS :: REQUIREMENTS Linux / WIndows / MacOsX Python :: DOWNLOAD TiltPicker :: MORE INFORMATION Citation: Voss NR, Yoshioka […]

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DoGpicker 0.2 - Particle Picker

DoGpicker 0.2 :: DESCRIPTION DoGpicker is a particle picker that uses difference of Gaussians (DoG) for picking particles ::DEVELOPER NRAMM :: SCREENSHOTS N/A :: REQUIREMENTS Linux / MacOsX / Windows Python :: DOWNLOAD DoGpicker :: MORE INFORMATION Citation: Voss NR, Yoshioka CK, Radermacher M, Potter CS, Carragher B. (2009) DoG Picker and TiltPicker: software tools […]

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ACE 2.4 / ACE2 1.0 - Automated CTF Estimation

ACE 2.4 / ACE2 1.0 :: DESCRIPTION ACE (Automated CTF Estimation) is a completely automated algorithm for estimating the parameters of the contrast transfer function (CTF) of a transmission electron microscope. ACE2 is a completely rewritten version of ACE. ACE2 adds the additional feature of robust astigmatism estimation and CTF correction with astigmatism using either […]